PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g044300.2.1
Common NameLOC100191138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 402aa    MW: 44944.5 Da    PI: 7.9426
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g044300.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17136185155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Solyc03g044300.2.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                         78*******************......55*************************98 PP

2AP243.38.8e-14228278155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Solyc03g044300.2.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 278
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15136193IPR016177DNA-binding domain
PROSITE profilePS5103217.635137193IPR001471AP2/ERF domain
SMARTSM003809.5E-31137199IPR001471AP2/ERF domain
CDDcd000187.57E-12137192No hitNo description
Gene3DG3DSA:3.30.730.101.5E-17137193IPR001471AP2/ERF domain
PfamPF008472.4E-9228278IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17228288IPR016177DNA-binding domain
CDDcd000186.86E-26228286No hitNo description
SMARTSM003802.3E-31229292IPR001471AP2/ERF domain
PROSITE profilePS5103215.672229286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16229287IPR001471AP2/ERF domain
PRINTSPR003673.9E-6230241IPR001471AP2/ERF domain
PRINTSPR003673.9E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MWNLNDSPDQ TMEYESDEGI TVRSESNSIS SALLVVEDGN SSEEDGEKGK KKKSNNTPGK  60
IFGFSIKDHN LESPVVTRQF FPVDNESTNF PRAQWAGIKF CESEPPLVNG LVGNKIDVLQ  120
QQPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGAEADI NFTSKDYEDD LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKD AVTNFDRSIY ENELNSTECT  300
DNATDHNLDL SLGGSSQEMG DNRGQNSSSN LQLDGHWGHQ GSSRHNNKVQ TPSSNNVGQI  360
GGTSNFQNNY EIIATAAASS GFPQQIIRTQ NNGFHHYFMR P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.207300.0fruit| leaf
Function -- GeneRIF ? help Back to Top
  1. SlAP2a is a negative regulator of ethylene production during ripening. Repression promotes early expression of ripening genes.
    [PMID: 21143675]
  2. Transcription factor APETALA2a regulates fruit ripening via regulation of ethylene biosynthesis and signaling.
    [PMID: 21398570]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0Solanum lycopersicum APETALA2-like protein mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234452.10.0APETALA2-like protein
SwissprotP479271e-124AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB2ZP480.0B2ZP48_SOLLC; APETALA2-like protein
STRINGSolyc03g044300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-120AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Chung MY, et al.
    A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening.
    Plant J., 2010. 64(6): p. 936-47
    [PMID:21143675]
  3. Karlova R, et al.
    Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.
    Plant Cell, 2011. 23(3): p. 923-41
    [PMID:21398570]